Home Technology Development Members Facilities Events Links Downloads Publications Jobs Contact Us
Publications

D. R. Bickel, Z. Montazeri, P.-C. Hsieh, M. Beatty, S. J. Lawit and N. J. Bate, Gene network reconstruction from transcriptional dynamics under kinetic model uncertainty: A case for the second derivative. Bioinformatics. 2009 Feb 13. Full paper

Anna Jezierski, Albert Swedani, Lisheng Wang., Development of Hematopoietic and Endothelial Cells from Human Embryonic Stem Cells: Lessons from the Studies using Mouse as a Model. TheScientificWorldJOURNAL. 2007 7 1950-1964. Full paper

Smith JC, Duchesne MA, Tozzi P, Ethier M, Figeys D., A differential phosphoproteomic analysis of retinoic acid-treated P19 cells. Journal of Proteome Research. (2007) 6(8):3174-3186. Abstract

Denis NJ, Vasilescu J, Lambert JP, Smith JC, Figeys D., Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry. Proteomics. 2007 Mar 16;7(6):868-874. Abstract / Full paper

Rob M Ewing, Peter Chu, Fred Elisma, Hongyan Li, Paul Taylor, Shane Climie, Linda McBroom-Cerajewski, Mark D Robinson, Liam O’Connor, Michael Li, Rod Taylor, Moyez Dharsee, Yuen Ho, Adrian Heilbut, Lynda Moore, Shudong Zhang, Olga Ornatsky, Yury V Bukhman, Martin Ethier, Yinglun Sheng, Julian Vasilescu, Mohamed Abu-Farha, Jean-Philippe Lambert, Henry S Duewel, Ian I Stewart, Bonnie Kuehl, Kelly Hogue, Karen Colwill, Katharine Gladwish, Brenda Muskat, Robert Kinach, Sally-Lin Adams, Michael F Moran, Gregg B Morin, Thodoros Topaloglou, and Daniel Figeys., Large-scale mapping of human protein–protein interactions by mass spectrometry. Mol Syst Biol. 2007;3:89. Epub 2007 Mar 13. Abstract / Full paper

Vasilescu J, Zweitzig DR, Denis NJ, Smith JC, Ethier M, Haines DS, Figeys D., The proteomic reactor facilitates the analysis of affinity-purified proteins by mass spectrometry: application for identifying ubiquitinated proteins in human cells. J Proteome Res. 2007 Jan;6(1):298-305. Abstract / Full paper

Hou W, Ethier M, Smith JC, Sheng Y, Figeys D., Multiplexed Proteomic Reactor for the Processing of Proteomic Samples. Anal Chem. 2007 Jan 1;79(1):39-44. Abstract / Full paper

Lee JW, Figeys D, Vasilescu J., Biomarker assay translation from discovery to clinical studies in cancer drug development: quantification of emerging protein biomarkers. Adv Cancer Res. 2007;96:269-98. Abstract

Ethier M, Hou W, Duewel HS, Figeys D., The proteomic reactor: a microfluidic device for processing minute amounts of protein prior to mass spectrometry analysis. J Proteome Res. 2006 Oct;5(10):2754-9. Abstract / Full paper

Smith JC, Figeys D., Proteomics technology in systems biology. Mol Biosyst. 2006 Aug;2(8):364-70. Epub 2006 Jun 27.Abstract

Vasilescu J, Figeys D., Mapping protein-protein interactions by mass spectrometry. Curr Opin Biotechnol. 2006 Aug;17(4):394-9. Epub 2006 Jul 5. Abstract

Ethier M, Figeys D, Perreault H., N-glycosylation analysis using the StrOligo algorithm. Methods Mol Biol. 2006;328:187-97. Abstract

Ethier M, Figeys D., Strategy to design improved proteomic experiments based on statistical analyses of the chemical properties of identified peptides. J Proteome Res. 2005 Nov-Dec;4(6):2201-6. Abstract / Full paper

Vasilescu J, Smith JC, Ethier M, Figeys D., Proteomic analysis of ubiquitinated proteins from human MCF-7 breast cancer cells by immunoaffinity purification and mass spectrometry. J Proteome Res. 2005 Nov-Dec;4(6):2192-200. Abstract / Full paper

Lambert JP, Ethier M, Smith JC, Figeys D., Proteomics: from gel based to gel free. Anal Chem. 2005 Jun 15;77(12):3771-87. Abstract / Full paper

Zhuravel D., Kaern M., Physics takes another stab at biological
design principles, Molecular Systems Biology (2005).

STOCHASTICITY IN GENE EXPRESSION: FROM THEORIES TO PHENOTYPES in Nature Reviews Genetics 6, 451-464 (2005); doi:10.1038/nrg1615

Systematic yeast synthetic lethal and synthetic dosage lethal screens identify genes required for chromosome segregation (501 KB PDF)